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Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
A curated list of awesome software for Apple's macOS.
ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells
ANDA: An open-source tool for automated image analysis of in vitro neuronal cells
macros for analysis of microtubular architecture in confocal z-stacks, the macros loop over directories of z-stacks as well as each slice in the image. The output then gets saved under a new folder…
imageJ script library for biology image analysis
Published Macros for image analysis & utilities for scalebars (ICH microscopes) & automating standard tasks. All are covered under an MIT License, so can be freely used and distributed.
Automated tracking of cell migration in phase contrast microscope images
KymoToolBox is an ImageJ plugin dedicated to construction and analysis of kymographs
ImageJ/Fiji Macro Set dedicated to cytometric analysis of n-dimensional images containing at least one channel of a nuclear dye, as well as a cellular counterstain and a mitochondria marker.
Software for Quantifying Mitochondrial Content in Live Cells
MiNA (Mitochondrial Network Analysis) is a project aimed at making the analysis and characterization of mitochondrial network morphology more accurate, faster, and objective. This project currently…
Automated mitochondrial segmentation and tracking.
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Fiji plugin to compute colocalization of spots in multichannel 2D and 3D images
Here, you find ImageJ Macros to identify contact sites between mitochondria and lysosomes from fluorescence microscopy data
ImageJ macros and scripts written at the imaging facility MRI
Macros related to image analysis with imageJ-FiJi
This is our implementation of Probabilistic Noise2Void
Code and plots for submissions to the #tidytuesday challenge
Deep Learning segmentation suite designed for 2D microscopy image segmentation
The ImageJ plugin to run deep-learning models