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xyz
The xyz module writes .xyz files (for visualisation) corresponding every cluster of a givendataset. This module includes the cluster module but pre-made clusters can be given using the -c argument. The save file will contain all files listed in the storage wiki page plus the following:
cluster_xyz/
This folder contains labelled and ordered .xyz files, each corresponding to one cluster. The indexing and ordering is the same as that given in the cluster_indices.npy file (see storage wiki page)
Usage: python run.py cluster [-h] -d <dataset_file> [-p <para_file>] [-c <cluster_file>]
-h
Displays a help function explaining each parameter.
-d <dataset_file>
Mandatory argument, explained in the basics wiki page.
-p <para_file>
Optional argument, explained in the basics wiki page.
-c <cluster_file>
Optional argument, explained in the basics wiki page.