Stars
BAsh-Based Automated Parallel Positive selection Analysis
No fortress, purely open ground. OpenManus is Coming.
Mixture Models for Allelic Imbalance Estimation
Two-Tier Ensemble Aggregation Gene Co-expression Network (TEA-GCN): Capturing tissue/condition-specific co-expression from large transcriptomic datasets
AnnotateSnakeMake is a Snakemake workflow routinely used in the Marlétaz lab to annotate genomes of echinoderm species.
A comparative genomics workflow using Nextflow, conda, Julia and R
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Best practices and workflow for genome annotation
A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
Gene Mining Pipeline for identifying olfactory receptors and other multicopy genes
Earl Grey: A fully automated TE curation and annotation pipeline
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Genome-scale detection of selective pressure variation
Generate IGV style locus tracks from bigWig files in R