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I'm a biologist-turned-research software engineer at the Sainsbury Wellcome Centre, working in the Margrie Lab and the Neuroinformatics Unit. I design tools for analyzing and visualizing neural imaging data.
🧠 Currently maintaining and developing:
- derotation: reconstructs clean movies from line-scanned 3-photon recordings of rotating brains
- photon-mosaic: an automated, Snakemake-based pipeline for calcium imaging data analysis
- translocator-models: a Python toolkit for modeling population fold changes in response to sensory stimuli
🌱 On the creative side, I'm also:
- Developing a Hydra-for-Jupyter integration to live-code generative visuals from notebooks
- Writing a small catalogue of creative coding scripts examples with Hydra, p5.js and more
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