Stars
Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IBL, Churchland, Pouget and Pillow (2021)
Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
Pre-processing pipeline for widefield data
Demixed subspace principal component analysis (dsPCA). This is a dimensionality reduction algorithm for high-dimensional data such as neural population activity.
Recording software for andor cameras with the possibility of implementing analysis in real time
Software and hardware for control of operant conditioning behavioural experiments
NI-DAQmx API for Python, created and supported by NI
Implemenation of Manifold Inference from Neural Dynamics (MIND) from Low & Lewallen et. al, '18
Python wrapper and examples for a USB thermo hygrometer from Strawberry Linux Co.,Ltd.
Set of tools to work with files created with Hamamatsu Orca cameras and their software (Hokawo and HCImage)
Constrained Nonnegative Matrix Factorization for microEndoscopic data
An algorithm for unsupervised discovery of sequential structure
Papers : Biological and Artificial Neural Networks
Scripts written in Matteo Carandini/Kenneth Harris' lab
Python script for illustrating Convolutional Neural Networks (CNN) using Keras-like model definitions
C++20 framework for creative coding 🎮🎨🎹 / Cross-platform support (Windows, macOS, Linux, and the Web)
a toolkit for pose estimation using deep learning
Dear ImGui: Bloat-free Graphical User interface for C++ with minimal dependencies
Python implementation of ImageJ Cell Magic Wand tool
Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualiza…
Matlab routines for online non-rigid motion correction of calcium imaging data