Stars
scripts to parse and analyse MCScanX collinearity output
A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.
tbenavi1 / genomescope2.0
Forked from schatzlab/genomescopeReference-free profiling of polyploid genomes
deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
Pipeline for generate Ks plots of transcriptome data.
Fast and accurately polish the genome generated by long reads.
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Fast and accurate de novo assembler for long reads
Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads
Create a pseudohaploid assembly from a partially resolved diploid assembly
Fastq_clean is optimised to batchly clean the NGS data from the IlluminaTM sequencer
⚡
A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform
MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
An emacs starterkit for scientists and engineers
A statistical framework for ploidy estimation using NGS short-read data
Fast genome analysis from unassembled short reads
Plann: a command-line application for annotating plastome sequences