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quickmerge Public
Forked from mahulchak/quickmergeA simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
C++ GNU General Public License v3.0 UpdatedJun 18, 2020 -
blobtools Public
Forked from DRL/blobtoolsModular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
Python GNU General Public License v3.0 UpdatedMay 1, 2019 -
Python package and CLI for whole genome duplication analyses
Python GNU General Public License v3.0 UpdatedMar 18, 2019 -
Genome-data-of-Hanfu-apple Public
Forked from moold/Genome-data-of-Hanfu-appleFASTA files of chromosomes and genes, gff files for gene models.
Perl UpdatedJan 30, 2019 -
assembly-stats Public
Forked from sanger-pathogens/assembly-statsGet assembly statistics from FASTA and FASTQ files
C++ Other UpdatedDec 4, 2018 -
editTools Public
Forked from funkhou9/editTools🔎 Detection and analysis of RNA editing evidence from VCF data
R Other UpdatedSep 12, 2018 -
fastp Public
Forked from OpenGene/fastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
C++ MIT License UpdatedAug 31, 2018 -
trinityrnaseq Public
Forked from trinityrnaseq/trinityrnaseqTrinity RNA-Seq de novo transcriptome assembly
Perl BSD 3-Clause "New" or "Revised" License UpdatedAug 2, 2018 -
Chloroplast-genome-single-copy-orientation-ratio-detection Public
Forked from asdcid/Cp-hapEstimate the ratio of different directions of single copy in the chloroplast genome
Python MIT License UpdatedJul 22, 2018 -
medusa Public
Forked from combogenomics/medusaA draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
Java GNU General Public License v3.0 UpdatedJul 3, 2018 -
Unicycler Public
Forked from rrwick/Unicyclerhybrid assembly pipeline for bacterial genomes
C++ GNU General Public License v3.0 UpdatedJul 2, 2018 -
Flye Public
Forked from mikolmogorov/FlyeFast and accurate de novo assembler for single molecule sequencing reads
C++ BSD 3-Clause "New" or "Revised" License UpdatedJun 4, 2018 -
shovill Public
Forked from tseemann/shovillFaster SPAdes assembly of Illumina reads
Perl GNU General Public License v3.0 UpdatedJun 3, 2018 -
Chroloplast-genome-assembly Public
Forked from asdcid/Chloroplast-genome-assemblyA pipeline for assemble chroloplast genome using short/long reads
Perl UpdatedMay 7, 2018 -
Fastq_clean Public
Forked from gaoshanT/Fastq_cleanFastq_clean is optimised to batchly clean the NGS data from the IlluminaTM sequencer
Perl UpdatedMar 25, 2018 -
ALLHiC Public
A package to scaffolding polyploidy or heterozygosis genome using Hi-C data
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PGA Public
Forked from quxiaojian/PGAPlastid Genome Annotation
Perl GNU General Public License v3.0 UpdatedMar 20, 2018 -
pbalign Public
Forked from suryasaha/pbalignpbalign maps PacBio reads to reference sequences and saves alignments to a BAM file
Python UpdatedMar 15, 2018 -
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LTR_retriever Public
Forked from oushujun/LTR_retrieverA highly accurate and sensitive program to identify LTR retrotransposons
Perl GNU General Public License v3.0 UpdatedMar 9, 2018 -
Comparative-Annotation-Toolkit Public
Forked from ComparativeGenomicsToolkit/Comparative-Annotation-ToolkitPython Apache License 2.0 UpdatedDec 19, 2017 -
gawn Public
Forked from enormandeau/gawnGAWN - Genome Annotation Without Nightmares
Perl UpdatedDec 18, 2017 -
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BTSearcher Public
Forked from titman/BTSearcherBTSearcher for mac.
Objective-C MIT License UpdatedJun 16, 2017 -
OM-HiC-scaffolding Public
Forked from wen-biao/OM-HiC-scaffoldingWorkflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
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