diffxpy covers a wide range of differential expression analysis scenarios encountered in single-cell RNA-seq scenarios and integrates into scanpy workflows. Import diffxpy as import diffxpy.api as de to access the following differential expression analysis-related tools:
- differential expression analysis in the module de.test.*
- gene set enrichment analysis based on differential expression calls in the module de.enrich.*
Refer to the documentation and the tutorials for details of these modules.