8000 Fix sc best practices link by mumichae · Pull Request #356 · theislab/scib · GitHub
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Fix sc best practices link #356

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Dec 21, 2022
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Fix sc best practices link #356

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12 changes: 6 additions & 6 deletions docs/source/api.rst
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Expand Up @@ -21,9 +21,9 @@ The most relevant preprocessing steps are:
+ Clustering

Note that some preprocessing steps depend on each other.
Please refer to the `best_practices`_ for more details.
Please refer to the `Single Cell Best Practices Book`_ for more details.

.. _best_practices: sc-best-practices.org
.. _Single Cell Best Practices Book: https://www.sc-best-practices.org

.. autosummary::
:toctree: api/
Expand Down Expand Up @@ -107,7 +107,7 @@ Most metrics require specific inputs that need to be preprocessed, which is desc


Biological Conservation Metrics
```````````````````````````````
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Biological conservation metrics quantify either the integrity of cluster-based metrics based on clustering results of
the integration output, or the difference in the feature spaces of integrated and unintegrated data.
Expand All @@ -129,7 +129,7 @@ the biological aspect that the metric addresses.


Batch Correction Metrics
````````````````````````
^^^^^^^^^^^^^^^^^^^^^^^^

Batch correction metrics values are scaled by default between 0 and 1, in which larger scores represent better batch
removal.
Expand All @@ -145,7 +145,7 @@ removal.


Metrics Wrapper Functions
`````````````````````````
^^^^^^^^^^^^^^^^^^^^^^^^^

For convenience, ``scib`` provides wrapper functions that, given integrated and unintegrated adata objects, apply
multiple metrics and return all the results in a ``pandas.Dataframe``.
Expand Down Expand Up @@ -176,7 +176,7 @@ based on expected computation time:


Auxiliary Functions
```````````````````
^^^^^^^^^^^^^^^^^^^

Some parts of metrics can be used individually, these are listed below.

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