Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
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Apr 29, 2025 - R
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tcga
Here are 42 public repositories matching this topic...
TCGAbiolinks
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Apr 7, 2025 - R
📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
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Oct 31, 2024 - R
Provide R access to the NCI Genomic Data Commons portal.
data-science bioinformatics r genomics cancer tcga api-client core-services bioconductor vignette nci
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May 12, 2025 - R
Bioconductor package for management of multi-assay data
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May 6, 2025 - R
Interactive R package to quantify, analyse and visualise alternative splicing
tcga gene-expression bioconductor alternative-splicing gtex survival splicing-quantification data-analyses differential-splicing-analysis rna-seq-data sra differential-gene-expression vast-tools recount2
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Jun 16, 2025 - R
Toolbox package for organizing and working with TCGA data
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Jun 10, 2025 - R
A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
genomics cancer tcga tumor gene-expression subtype cosmic nci60 kolmogorov-smirnov ranking-algorithm cell-lines ccle
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Nov 6, 2020 - R
The pipeline to produce TCGA data as MultiAssayExperiment objects
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May 16, 2023 - R
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
gene-sets big-data tcga rna-sequencing pancancer gsea fmm cohorts big-data-analytics finite-mixture variance-analysis handiling-heteogeneity gene-set-analysis data-discretization
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Aug 13, 2020 - R
Simulation of interactions miRNA:Competing Targets
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Feb 8, 2024 - R
DEEPEST-Fusion is a fusion detection algorithm specially designed for screening massive cancer sequencing databases
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Feb 8, 2021 - R
Example data to TCGAWorkflow
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Dec 29, 2022 - R
Supplementary Material of manuscript, and Cutoff Finding R script
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Aug 16, 2021 - R
HNSCC survival analysis
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Jun 13, 2021 - R
Genomic data from TCGA ready to be used (organized per tissue type and in matrix form)
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Nov 30, 2018 - R
Benchmark survival ML models against a multimodal TCGA dataset
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Apr 21, 2023 - R
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