A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
Damage parameter estimation for ancient DNA
Coprolite host Identification pipeline
The Poseidon Community Archive (PCA).
A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.
Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.
Uncertainty estimation toolkit for dimensionality reduction on population genetics data.
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
R Package - Spatiotemporal Ancestry Interpolation and Search
A toolset to work with modular genotype databases in the Poseidon format
A pipeline for the analysis of sedimentary ancient mtDNA
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
Main landing page for getting information about the Poseidon project
🗑️🦷 decOM 🦷🗑️
Statement of the Ethics Discussion Group at the Department of Archaeogenetics (MPI-SHH/MPI-EVA)
Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
Website and data repository a directory of ancient metagenomic labs
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