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pool-sequencing

Here are 6 public repositories matching this topic...

grenepipe

moiexpositoalonsolab / grenepipe

A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.

snakemake variant-calling population-genetics variant-calls snakemake-workflow pool-sequencing ancient-dna evolve-and-resequence genomic-variant-calling

Updated Jun 19, 2025
Python

lczech / genesis

Code
Issues
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A library for working with phylogenetic and population genetic data.

c-plus-plus phylogenetic-trees phylogenetics population-genetics evolutionary-placement phylogenetic-data placement pool-sequencing phylogenetic-placements

Updated Jun 23, 2025
C++

grenedalf

lczech / grenedalf

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

population-genetics popoolation popoolation2 allele-frequencies pool-sequencing evolve-and-resequence poolfstat

Updated Jan 31, 2025
C++

MartaPelizzola / ACER

Adapted chi-squared and CMH test to evolve and resequenced data. Includes drift and pool sequencing variance in the tests

evolution drift chi-square-test adapted pool-sequencing

Updated Aug 16, 2023
R

jeffersonfparil / poolgen

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

bioinformatics gwas evolution population-genetics families genomic-selection polyploid quantitative-genetics allele-frequencies heterozygosity genomic-prediction pool-sequencing site-frequency-spectrum pool-seq-data

Updated Jun 8, 2025
Rust

ozankiratli / poolseq-VCF2FREQ

A tool to convert poolseq VCF to allele frequencies.

bash awk pool-sequencing

Updated Jun 26, 2024
Shell

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