Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues
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Jun 9, 2025 - Python
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embryogenesis
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PrESOgenesis is a Support Vector Machine-based classifier to predict the spermatogenesis/embryogenesis/oogenesis related proteins based on 1920 meaningful protein sequence features.
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Apr 16, 2020 - Perl
deep-learning for metadata extraction from the C. elegans embryo
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Apr 10, 2021 - Jupyter Notebook
An ImageJ PlugIn for cell segmentation in an embryo of c.elegans
machine-learning image-processing segmentation google-summer-of-code image-segmentation imagej-plugins fiji-plugin weka-api embryogenesis
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Feb 23, 2019 - Java
Single-cell RNA-seq analysis of mouse gastrulation using data from Argelaguet and Pijuan-Sala. The project includes preprocessing, SCVI-based dataset integration, differential gene expression analysis, and a no-code interface powered by Chatmol for natural language interaction with the pipeline.
python bioinformatics deep-learning gpu-acceleration dimensionality-reduction scrna-seq data-integration llama single-cell differential-expression umap developmental-biology no-code embryogenesis scanpy gastrulation anndata scvi-tools mouse-development
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Jun 1, 2025 - Jupyter Notebook
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