Fast genome-wide functional annotation through orthology assignment
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May 13, 2024 - Python
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functional-annotation
Here are 57 public repositories matching this topic...
ATLAS - Three commands to start analyzing your metagenome data
snakemake annotation assembly metagenomics taxonomic-classifications genomic-binning functional-annotation
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Mar 20, 2025 - Python
Source ontology files for the Gene Ontology
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Apr 30, 2025 - Makefile
An R package for performing STAAR procedure in whole-genome sequencing studies
statistical-genetics whole-genome-sequencing functional-annotation rare-variant-analysis staar-procedure
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Feb 9, 2025 - C++
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-analysis staar-pipeline
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Mar 23, 2025 - R
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
visualization python bioinformatics cog genomics protein microbial-genomics comparative-genomics genome-analysis functional-analysis functional-annotation
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Apr 19, 2025 - Python
Graph-based modeling environment for biology, including prototype editor and services
annotation owl ontology pathways curation geneontology functional-annotation noctua noctua-models go-cam
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Jan 24, 2024 - JavaScript
This repository hosts the tracker for issues pertaining to GO annotations.
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Apr 29, 2025 - Python
UniProt Id Mapping through API
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Oct 1, 2024 - Python
AmiGO is the public interface for the Gene Ontology.
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Apr 11, 2025 - JavaScript
A tool for domain based annotation with databases from the Conserved Domains Database
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Sep 20, 2024 - HTML
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation multi-trait-analysis rare-variant-analysis staar-pipeline
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Dec 3, 2024 - R
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
meta-analysis statistical-genetics whole-genome-sequencing functional-annotation rare-variant-analysis metastaar-procedure
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Nov 9, 2024 - R
The Gene Ontology Helpdesk
go helpdesk ontology gene-ontology genes ontologies curation geneontology functional-annotation noctua noctua-models
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Feb 6, 2025
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
snakemake pipeline nextflow diamond metagenomics functional-annotation kaiju taxonomic-classification
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Apr 16, 2025 - Nextflow
Tool for integrative gene-based association analysis using GWAS summary stats
gwas genetic-analysis integrative-analysis functional-annotation twas genetic-epidemiology gene-based gwas-summary-statistics regulatory-elements
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Aug 28, 2019 - C++
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-analysis staar-pipeline
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Oct 16, 2024 - R
GOMAP-Singularity is the containerized version of GOMAP
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Jul 16, 2023 - Shell
R/Bioconductor package for optimized functional annotation of ChIP-seq data
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May 15, 2019 - R
A pipeline to go from raw sequencing data to high quality bins and pretty plots.
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Sep 7, 2018 - Python
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