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molecular-biology

Here are 157 public repositories matching this topic...

poly

bebop / poly

A Go package for engineering organisms.

Updated Oct 21, 2024
Go

Edinburgh-Genome-Foundry / DnaFeaturesViewer

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

visualization bioinformatics synthetic-biology genbank molecular-biology dna-visualization

Updated May 9, 2025
Python

dna-3d-engine

pallada-92 / dna-3d-engine

3d engine implementation in DNA code!

biology dna chemical-kinetics cube 3d chemical-reaction-networks molecular-biology 3d-engine chemical-reactions raymarching in-vitro piperine strand-displacement molecular-programming real-reactive-programming

Updated Nov 29, 2020

3dem / relion

Image-processing software for cryo-electron microscopy

Updated Jun 6, 2025
C++

lightdock

lightdock / lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Updated Jun 7, 2025
Python

saezlab / pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

python database resource network molecular-biology pathway genetic-regulatory-network

Updated Jun 6, 2025
Python

paulstothard / sequence_manipulation_suite

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

protein-sequences molecular-biology sequence-analysis dna-processing

Updated Nov 15, 2024

glycowork

BojarLab / glycowork

Package for processing and analyzing glycans and their role in biology.

python open-source data-science machine-learning bioinformatics computational-biology molecular-biology glycomics glycans glycobiology

Updated Jun 9, 2025
Jupyter Notebook

BioExplorer

BlueBrain / BioExplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

Updated Nov 14, 2024
C++

Edinburgh-Genome-Foundry / DnaCauldron

⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinato 10000 rial assemblies

synthetic-biology molecular-biology dna-assembly golden-gate cloning-simulator

Updated May 12, 2025
Python

saezlab / mistyR

Multiview Intercellular SpaTial modeling framework

machine-learning modular r biology spatial bioconductor molecular-biology multiview spatial-transcriptomics intercellular

Updated Jun 6, 2025
R

timdecode / LifeBrush

A toolkit for painting agent-based mesoscale molecular simulations and illustrations.

procedural-generation vr virtual-reality molecular-simulation unreal-engine agent-based-modeling texture-synthesis molecular-biology

Updated May 7, 2020
C++

bpucker / teaching

This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

rna-seq genomics sequencing python3 teaching cloning igem python2 transcriptomics pcr molecular-biology peer-review

Updated May 1, 2025

cryoem-uoft / cryosparc-tools

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

python c image-processing high-performance-computing cryo-em molecular-biology cryosparc cryosparc-tools

Updated D7AF May 30, 2025
Python

DLS5-Omics / multimolecule

Accelerate Molecular Biology Research with Machine Learning

machine-learning molecular-biology ai4science

Updated Jun 13, 2025
Python

Koeng101 / dnadesign

A Go package for designing DNA.

go bioinformatics synthetic-biology computational-biology sam genbank fasta fastq molecular-biology synbio rna-folding goldengate dna-barcode plasmids codon-optimization codon-usage pileup genetic-engineering dna-folding

Updated Dec 14, 2024
Go

Edinburgh-Genome-Foundry / crazydoc

Read DNA sequences from colourful Microsoft Word documents

bioinformatics synthetic-biology molecular-biology dna-sequences computer-aided-design

Updated May 12, 2025
Python

QCB-Collaboratory / W17.MachineLearning

Course material for the Collaboratory Workshop "Machine Learning with Python"

machine-learning workshop biology workshop-materials molecular-biology

Updated Feb 11, 2019
Jupyter Notebook

MahShaaban / pcr

Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data

data-analyses molecular-biology qpcr

Updated Jul 15, 2024
R

Edinburgh-Genome-Foundry / Caravagene

🎨 Python library to plot multi-part genetic constructs

synthetic-biology molecular-biology dna-assembly sequence-design

Updated Apr 9, 2025
Python

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