R package for High dimensional data analysis and integration with O2PLS!
OmicsSuite website for releasing new version.
Integrated Machine Learning for Multi-omics Classification and Prediction
Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project
An open-source R package for the Tapestri platform for integrative single cell multiomics data analysis
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.
A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).
Prokaryote Gene Regulatory Network (ProGRN) Inference Pipeline
The documented analysis of the results reported in Akol et al., 2023 as R markdowns, Galaxy histories and jupyter logs..
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