nextstrain
Here are 36 public repositories matching this topic...
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
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Jul 7, 2025 - Python
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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Jul 8, 2025 - Rust
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
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Jul 8, 2025 - Python
Nextstrain build for mpox virus
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Jul 7, 2025 - Python
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
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May 13, 2025 - Python
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
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Jun 16, 2025 - JavaScript
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Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
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Jul 7, 2025 - Nextflow
SARS-CoV-2 variant growth rates and frequency forecasts
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Jul 3, 2025 - Python
VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.
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Apr 23, 2023 - Vue
the repository used to build West Nile Virus for nextstrain
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May 10, 2025 - Python
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Jul 2, 2025 - Python
Parallelization of Nextstrain builds and parameter testing using Nextflow
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May 18, 2022 - Nextflow
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
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Feb 17, 2024 - Python
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