Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
A Python package for microbiome sequencing analysis with QIIME 2
Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
A Qiime plugin for MICOM.
Effect size calculations for microbiome data
q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
This is a QIIME2 plugin that annotates sequence data with antimicrobial resistance gene information from CARD.
The unified functional prediction and comparative analysis for 16S rRNA gene sequencing data
qiime2 decontam plugin
q2-shared_asv is a QIIME 2 plugin for shared ASV analysis.
Command line tool that writes commands to run one by one to perform analyses (mainly using qiime2) on a HPC running Slurm, Torque or none of these.
TEIXEIRA, J. V. A.; SOUZA, E. C. Use of microbial fuel cell systems in wastewater treatment in connection with bioenergy generation. Desafios. Revista Interdisciplinar da Universidade Federal do Tocantins. Palmas, 2025. DOI: // Microbial fuel cells: Unveiling microbial diversity for sustainable wastewater treatment and bioenergy production
En este repositorio se encuentran todos los scripts utilizados para mi tesis de maestría, titulada: "Estudio in silico de la interacción metabólica entre cáncer de mama y microbiota intratumoral"
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