An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
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Oct 14, 2024 - R
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rna
Here are 33 public repositories matching this topic...
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
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Jun 25, 2024 - R
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
package r analysis hpc notebook dna expression microarray rna reproducibility large-scale affymetrix copy-number
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Mar 15, 2025 - R
G4-iM Grinder is a fast, robust and highly adaptable algorithm. It is capable of locating, identifying, qualifying and quantifying DNA and RNA potential quadruplex structures, such as G-quadruplex, i-Motifs and their higher order versions.
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Mar 27, 2025 - R
The diversity of RNA structural elements and their documented role in human diseases make RNA an attractive therapeutic target. However, progress in drug discovery and development has been hindered by challenges in the determination of high-resolution RNA structures and a limited understanding of the parameters that drive RNA recognition by smal…
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Mar 21, 2023 - R
R package for the RNA Centric Annotation System (RCAS)
go reporting bioconductor rna interactive-plots msigdb modification protein-rna-interactions par-clip motif-discovery coverage-distribution cage
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Feb 4, 2024 - R
📦 Structstrings: implementation of Biostrings to work with dot bracket annotations
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Nov 2, 2024 - R
A workflow for eTAM-seq data processing.
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Dec 5, 2023 - R
Tracking the evolution of esophageal squamous cell carcinoma under dynamic immune selection by multi-omics sequencing
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Oct 14, 2022 - R
📦 RNAmodR: detection of post-transcriptional RNA modifications based on HTS data
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Mar 26, 2024 - R
Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
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Dec 6, 2016 - R
Tools for extracting structural information from NMR chemical shift data
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Dec 5, 2020 - R
Pre-processing pipeline for RNA crosslinking and High throughput sequencing data.
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Mar 21, 2025 - R
📦 RNAmodR.AlkAnilineSeq: detection of m7G, m3C and D modification by AlkAnilineSeq
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Mar 26, 2024 - R
📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
dna bioconductor rna sequences nucleotides rna-modifications biostrings modified-nucleotides rna-modification-alphabet dna-modifications
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Mar 26, 2024 - R
📦 RNAmodR.RiboMethSeq: detection of 2'-O methylations by RiboMethSeq
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Mar 26, 2024 - R
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