Add missed headers to CMakeList.txt config #54
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
CMakeLists.txt (1)
36-68: Consider consolidating common headers.I notice that
my_queue.hexists in bothsprawl_utilsandmultiscale_openingdirectories. Consider consolid 8000 ating common headers into a shared include directory to avoid duplication and potential maintenance issues.Suggested approaches:
- Move common headers to a shared include directory (e.g.,
src/PartSegCore_compiled_backend/include/)- Update include paths in CMake accordingly
- Consider using symbolic links if the headers need to remain in their current locations
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📒 Files selected for processing (1)
CMakeLists.txt(1 hunks)
🔇 Additional comments (3)
CMakeLists.txt (3)
36-68: LGTM! Headers are consistently added across all sprawl_utils modules.
The changes look good overall. The headers are consistently added to all relevant modules, and the installation setup remains correct with all affected modules being installed to the same destination.
36-40: Verify header file existence and check other sprawl_utils modules.
The header additions look correct, but let's verify the existence of these files and check if other modules in the sprawl_utils directory might need these headers for consistency.
✅ Verification successful
Headers are correctly added to all relevant modules
The verification shows that:
- Both header files (
my_queue.handglobal_consts.h) are included indistance_utils.pxd, which is a common interface file for the sprawl utils modules. - The headers are consistently added to all four Cython modules in the sprawl_utils directory that need them:
- euclidean_cython
- path_sprawl_cython
- sprawl_utils
- fuzzy_distance
The changes are complete and consistent, properly adding the required headers to all relevant modules in the CMakeLists.txt file.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Check if the header files exist
if ! [ -f "src/PartSegCore_compiled_backend/sprawl_utils/my_queue.h" ] || \
! [ -f "src/PartSegCore_compiled_backend/sprawl_utils/global_consts.h" ]; then
echo "Warning: One or both header files are missing!"
fi
# Find all .pyx files in sprawl_utils to check if we missed any modules
fd -e pyx . src/PartSegCore_compiled_backend/sprawl_utils/
Length of output: 540
Script:
#!/bin/bash
# Let's check if these headers are included in any of the .pyx files
echo "=== Checking my_queue.h inclusions ==="
rg -l "my_queue\.h" src/PartSegCore_compiled_backend/sprawl_utils/
echo -e "\n=== Checking global_consts.h inclusions ==="
rg -l "global_consts\.h" src/PartSegCore_compiled_backend/sprawl_utils/
# Also check the CMakeLists.txt to see all python_add_library commands
echo -e "\n=== Checking CMakeLists.txt for python_add_library ==="
rg "python_add_library" CMakeLists.txt -A 4
Length of output: 2791
45-49: Verify header dependencies in Cython modules.
The headers are consistently added across all sprawl_utils modules. Let's verify that these headers are actually used in the Cython files and check for any potential circular dependencies.
Also applies to: 54-58, 64-68
✅ Verification successful
Headers are correctly included and used across modules
The verification confirms that both headers are essential and properly used across the sprawl_utils modules:
-
my_queue.hprovides a custom queue implementation that is actively used across multiple Cython modules:- Used via
my_queue[Point]in path_sprawl_cython.pyx, fuzzy_distance.pyx, euclidean_cython.pyx, and put_borders_in_queue.pyx - The queue implementation is critical for the border processing algorithms
- Used via
-
global_consts.hprovides shared constants used across the modules:- Contains neighborhood definitions and distance constants used by the path sprawl algorithms
- The neighborhood arrays are used in conjunction with the queue operations for traversal
The consistent inclusion of these headers across all modules is justified by their shared functionality, and there are no circular dependencies or unused includes.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Check for header inclusions in the Cython source files
echo "Checking my_queue.h usage:"
rg -l "my_queue\.h" "src/PartSegCore_compiled_backend/sprawl_utils/*.pyx"
echo "Checking global_consts.h usage:"
rg -l "global_consts\.h" "src/PartSegCore_compiled_backend/sprawl_utils/*.pyx"
Length of output: 476
Script:
#!/bin/bash
# First, let's find the actual Cython source files
echo "Finding Cython source files:"
fd -e pyx . src/PartSegCore_compiled_backend/sprawl_utils/
echo "\nChecking my_queue.h usage:"
fd -e pyx . src/PartSegCore_compiled_backend/sprawl_utils/ -x rg -l "my_queue\.h" {}
echo "\nChecking global_consts.h usage:"
fd -e pyx . src/PartSegCore_compiled_backend/sprawl_utils/ -x rg -l "global_consts\.h" {}
# Let's also check the actual header files to understand their content
echo "\nChecking if header files exist:"
ls -l src/PartSegCore_compiled_backend/sprawl_utils/my_queue.h src/PartSegCore_compiled_backend/sprawl_utils/global_consts.h
echo "\nPeeking into header files (if they exist):"
echo "my_queue.h:"
cat src/PartSegCore_compiled_backend/sprawl_utils/my_queue.h
echo "\nglobal_consts.h:"
cat src/PartSegCore_compiled_backend/sprawl_utils/global_consts.h
Length of output: 4144
Script:
#!/bin/bash
# Let's check the actual usage of these headers in the Cython files
echo "Checking header includes in Cython files:"
for f in $(fd -e pyx . src/PartSegCore_compiled_backend/sprawl_utils/); do
echo "\nFile: $f"
rg "cdef extern from" -A 2 "$f"
done
# Also check if there are any .cpp files generated from Cython that might use these headers
echo "\nChecking for generated cpp files:"
fd -e cpp . src/PartSegCore_compiled_backend/sprawl_utils/
# If any cpp files found, check their includes
for f in $(fd -e cpp . src/PartSegCore_compiled_backend/sprawl_utils/); do
echo "\nChecking includes in $f:"
rg "#include" "$f"
done
Length of output: 1998
Script:
#!/bin/bash
# Let's check the content of the Cython files directly for any usage patterns
echo "Checking path_sprawl_cython.pyx content:"
cat src/PartSegCore_compiled_backend/sprawl_utils/path_sprawl_cython.pyx
echo "\nChecking for queue-related patterns in all Cython files:"
rg -i "queue" src/PartSegCore_compiled_backend/sprawl_utils/*.pyx
echo "\nChecking for neighborhood/distance patterns in all Cython files:"
rg -i "neigh|distance" src/PartSegCore_compiled_backend/sprawl_utils/*.pyx
Length of output: 18625
Summary by CodeRabbit
New Features
Bug Fixes