Here are
20 public repositories
matching this topic...
Randomly subsample sequencing reads or alignments
Updated
Nov 29, 2024
Rust
FASTA and FASTQ parsing in Rust
Updated
Mar 14, 2025
Rust
Compute a pairwise SNP distance matrix from one or two alignment(s)
Updated
Sep 12, 2024
Rust
process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
Updated
Feb 13, 2025
Rust
A FASTA/FASTQ format parser library
snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.
Updated
Nov 20, 2024
Rust
Rust crate to parse Uniprot FASTA headers.
Updated
Sep 17, 2020
Rust
a fastx parser for generating sequence length metrics
Updated
Apr 20, 2023
Rust
Ultrafast to get statistics from fasta and fastq files
Updated
Mar 13, 2023
Rust
a collection of CLI utilities for processing fasta/fastq (FASTX) files.
Updated
Apr 18, 2025
Rust
A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.
Updated
Feb 26, 2025
Rust
fakit: a simple program for fasta file manipulation
Updated
Apr 27, 2025
Rust
A FASTA parser and writer written in Rust
A library to read, manipulate and write various genetic sequencing formats.
Updated
Jan 18, 2023
Rust
Speedy FASTA/FASTQ library and toolkit
Updated
Jun 11, 2017
Rust
DNA FASTA encoder for compressing raw sequences into searchable binary format (extract nth subsequence using random access without index file)
Updated
Apr 11, 2024
Rust
Suffix Array Library for Rust
Updated
Apr 27, 2022
Rust
Ultra-fast, zero-copy, lazy Multi-FASTA parser.
Updated
Oct 16, 2024
Rust
perform interval queries on an indexed fasta file
Updated
Aug 23, 2023
Rust
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